Karen Eilbeck

  • Curriculum Vitae

PERSONAL DATA
Associate Professor
Department of Biomedical Informatics
Eccles Institute of Human Genetics
University of Utah
Salt Lake City, UT 84112
Phone: 801‐585‐9934

University web page: http://medicine.utah.edu/faculty/mddetail.php?facultyID=u0514925 

020-eilbeck


EDUCATION


PROFESSIONAL EXPERIENCE

Present Position

2012 – present Associate Professor

Department of Biomedical Informatics
University of Utah & School of Medicine
Salt Lake City, UT

2010-present Adjunct Assistant Professor

Department of Human Genetics
Eccles Institute of Human Genetics
University of Utah & School of Medicine
Salt Lake City, UT

Past Academic Position

2010-2012 Assistant Professor,

Department of Biomedical Informatics
University of Utah & School of Medicine
Salt Lake City, UT

2005 – 2010 Research Assistant Professor,
Department of Human Genetics
Eccles Institute of Human Genetics
University of Utah & School of Medicine
Salt Lake City, UT

2007 – 2010 Adjunct Assistant Professor,
Department of Biomedical Informatics
University of Utah & School of Medicine
Salt Lake City, UT

2003 – 2005
Chief Architect of the Sequence Ontology & Programmer Analyst, University of California,
Berkeley Drosophila Genome Project (BDGP),
Berkeley, CA

Past Industrial Position

2000 – 2003
Scientist,
Celera Genomics, Rockville, MD


RESEARCH AWARDS AND GRANTS
Active

  • Extension Of The Sequence Ontology: Preparing for the (re) Sequencing Revolution   National Institute of Health R01HG004341 (renewal) Role: PI
  • A Unified Clinical Genomics Database National Institute of Health U41 HG006834 Rehm, et al (PI) Role:  Sub Contract PI
  • A Knowledge Base for Clinically Relevant Genes and Variants 1U01HG007437  Berg(PI)  National Institute of Health Role: Sub Contract PI
  • Clinical Genome Inference System: Variant Prioritization for Clinical Diagnosis. National Institute of Health 5R44HG006579-03 Reese (PI) Role: Investigator
  • A Community Driven Framework for Genome Based Clinical Diagnostics  National Institute of Health 1R01HG008628 CO-PI with Gabor Marth

Completed

  • Gene Ontology Consortium Jackson Laboratory P41 HG002273 Role: Subcontract PI
  • Software to facilitate the use of the Sequence Ontology National Institute of Health R01 HG004341 Role: PI
  • University of Utah Medical Informatics Training Administrative Supplement NIH National Library of Medicine  Role: Investigator
  • Disease Annotations For Variants in Personal Genomes SBIR NIH Reese (PI) Role: PI
  • Structuring Genomic Variant Data for the Electronic Medical Record University of Utah Program in Personalized Health Care. Role: PI
  • RCKMS Project IPA  Center for Disease Control and Prevention Role: Investigator

SOFTWARE


DATA STANDARDS

  • GVF: A standard format for the variant file for personal genome annotation: GVF